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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC

Basic information

species Arabidopsis thaliana
transcript AT5G06120.2
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 15
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccatttt--agtgtggttagtggtgccttcattgtctcatctcctcttc---ttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
| || | | || | | | | || ||||| ||| ||| | || | | ||| | || | | || ||||| | || ||||||||||||| |||||||||||||||||||||||||||| || ||| | ||||| | || ||||| |||||||||||||||||||| || || ||||
------------------------------------------------------------------------------------ttttccctttacaaatg-tgaaatgtactttgtcatttacaggtggaattacttctgatgtatgttcctctttcccccctggggtttgcttgattctgcagGTTACGACCCCATTGTTGAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 21
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtg-tggttagtggtgcct-tcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
||||||| | || | | | ||| || | | || | | || || | | | | | ||||| || |||| | || ||||||| ||||||||||| |||||||||||||||||||||| || ||| | ||||| | || ||||| |||||||||||||||||||| || || ||||
----------------------------------------------------------------------------------ttctaattttccctttataaatgtactttgtcatttacatgtgtaattacttctgatgtatgttcctcttccccctcctggggttcacttgattctgcagGTTACCACCCCGTTGTTAAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: EFJ32102 (Selaginella moellendorffii), 3'ss of exon 20
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
|| | | | | | | | ||| ||| ||| | | | | |||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| || || ||||| || |||| || |
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: EFJ37744 (Selaginella moellendorffii), 3'ss of exon 20
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
|| | | | | | | | ||| ||| ||| | | | | |||| ||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| || || ||||| || |||| || |
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                            tgttgat  putative branch site (score: 4)