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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC

Basic information

species Arabidopsis thaliana
transcript AT5G06120.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 15
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccatttt--agtgtggttagtggtgccttcattgtctcatctcctcttc---ttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                                                                     |   ||  | |   || |   | |   | || |||||    |||   ||| |  ||   |   |  ||| |  || | |    || ||||| |  || ||||||||||||| ||||||||||||||||||||||||||||  || ||| | |||||  | || ||||| |||||||||||||||||||| || || ||||
------------------------------------------------------------------------------------ttttccctttacaaatg-tgaaatgtactttgtcatttacaggtggaattacttctgatgtatgttcctctttcccccctggggtttgcttgattctgcagGTTACGACCCCATTGTTGAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 21
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtg-tggttagtggtgcct-tcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                                                                  |||||||   |   || | | | |||    ||    |  |  ||  |   |  || ||  | |   | |  |  |||||    ||  |||| |  || ||||||| ||||||||||| ||||||||||||||||||||||  || ||| | |||||  | || ||||| |||||||||||||||||||| || || ||||
----------------------------------------------------------------------------------ttctaattttccctttataaatgtactttgtcatttacatgtgtaattacttctgatgtatgttcctcttccccctcctggggttcacttgattctgcagGTTACCACCCCGTTGTTAAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: EFJ32102 (Selaginella moellendorffii), 3'ss of exon 20
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                                                                                                                   || |  | |   | |  | |  |||  ||| |||   |  | | |  |||| ||||||||||||||||||||||||||||| |||||    ||||| || ||||||||||| ||||| ||||| || || ||||| ||  |||| || |
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC

upper sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: EFJ37744 (Selaginella moellendorffii), 3'ss of exon 20
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                                                                                                                   || |  | |   | |  | |  |||  ||| |||   |  | | |  |||| ||||| ||||||||||||||||||||||| |||||    ||||| || ||||||||||| ||||| ||||| || || ||||| ||  |||| || |
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC
                                            tgttgat  putative branch site (score: 4)