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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctgattcgttgttattctctcttttcagcgtcattcattaaaaaacctccattgtgtttttctatattcatcagtattcaagtgattgaatgtttttgcctcttcaccatttgatctgactcgccacttcataactgttcagGTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTACATAGGCGCGCATGTTGCATTGACCTCTGCGACCTTGGCGGTTTGATGAA

Basic information

species Arabidopsis thaliana
transcript AT3G08960.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116376075|gb|EG418667.1|EG418667
EST:     TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAA                         GTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC
genomic: TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAAgtgagtttct ... aactgttcagGTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC
EST: gi|116376078|gb|EG418670.1|EG418670
EST:     TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAA                         GTGAGTGAACTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC
genomic: TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAAgtgagtttct ... aactgttcagGTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC
EST: gi|116376076|gb|EG418668.1|EG418668
EST:     TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAA                         GTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC
genomic: TGCCTCGTGATTGTTTGTTTCCTTATCAGTTAAAGAGCAGCAGTATTCAAgtgagtttct ... aactgttcagGTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgtttttgcctcttcaccatttgatctgactcgccacttcataactgttcagGTGAGTGAGCTTTTCTTCCCTTTACGGTTATGGATTTGATGGGTGTGTTACATAGGCGCGCATGTTGCATTGACCTCTGCGACCTTGGCGGTTTGATGAA
                                         tcataac  putative branch site (score: 2)
                     atttgat  TA-rich tract