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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggtttcagcacttaactcatttttaacctgaataattttatatttctttgaagtattgcttaatatttccactggaactgtgttacagAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAGAGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGC

Basic information

species Arabidopsis thaliana
transcript AT1G71820.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71820.1 (Arabidopsis thaliana), 3'ss of exon 23
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 22
--------------------gtaagttggtttcag---cacttaactcat--ttttaacctgaataatttt------atatttctttgaagtattgctta--------atatttccactggaactgtgttacagAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAGAGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGC
                     ||||||   |  |    || ||| ||||   ||||  |  | ||||||||       ||||  | ||   |  | ||||        ||||||||        ||||||||||||||| || | |||| |||| ||| |||| ||  ||||||| ||||| ||||||||||| || ||| |||| |||||| | ||| | || ||||| || |
gtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttatatttctttgaagtattgcttaatatttccactggaactgtgttacagAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAGAGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGC
                        gcttaat  putative branch site (score: 4)
                    tattgcttaatattt  TA-rich tract