Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctacatactttttaaacgcaatgctatctacattcatgactacagatcgagacatggaaaactgagaccaaaaggaacactgattgtgtcatatctgttgtgtcataacctgatttttccttattgtagAACACATCTCGGGAAATTAAACGTATGGATTCCACTACAAGATCGCCAGTTTATGCTCAATTTGGTGAGGCATTGAATGGACTATCTAGTATCCGTGCTT

Basic information

species Arabidopsis thaliana
transcript AT1G30400.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.1 (Arabidopsis thaliana), 3'ss of exon 23
lower sequence: LOC_Os04g52900.1 (Oryza sativa), 3'ss of exon 22
gtaacctacatactttttaaacgcaatgctatctacattcatgactacagatcgagacatggaaaactgagaccaaaaggaacactgattgtgtcatatctgttgtgtcataac--ctgat-ttttccttattgtagAACACATCTCGGGAAATTAAACGTATGGATTCCACTACAAGATCGCCAGTTTATGCTCAATTTGGTGAGGCATTGAATGGACTATCTAGTATCCGTGCTT
                                 ||| ||  ||||  | ||        |  ||||   | |  |||      | || | ||   | |  | |||  || | ||  || ||   |  ||| |   |||  || ||||| ||  | || ||  ||||||||| |||||| || || || ||||||||||||   |||||||||||||| || ||||  |||||||| |
--------------------------------gtacttttgtgacagctgacttt--tttaaaaaatatatattaaagattgtattgttagtccta-acttcttgaatcttgacatctcatacctgtcttttcccagACTACGTCTCGTGAGGTAAAGCGCCTGGATTCCATTACAAGGTCTCCTGTGTATGCTCAATTTTCAGAGGCATTGAATGGTCTGTCTACAATCCGTGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124982921|gb|EL055693.1|EL055693
EST:     TCTGTATTACCAG                         AACACATCTCGGGAAATTAAACGTATGGATTCCACTACAAGATCGCCAGTT
genomic: TCTGTATTACCAGgtaacctaca ... cttattgtagAACACATCTCGGGAAATTAAACGTATGGATTCCACTACAAGATCGCCAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacactgattgtgtcatatctgttgtgtcataacctgatttttccttattgtagAACACATCTCGGGAAATTAAACGTATGGATTCCACTACAAGATCGCCAGTTTATGCTCAATTTGGTGAGGCATTGAATGGACTATCTAGTATCCGTGCTT
                                  cctgatttttcctt  CT-rich tract
                                    tgattttt  TA-rich tract