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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacctgacaattttgggaaaatcctcctacatattattaaaccccattcaaccttgacttcaatgggcagtacacaaatgtgaaataatgagtttcgaagctaagagggaccgtcatgactgttgtgttgagatgagatatactaatgtagcttttgctgtgttgccagAAAACAAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGTCTAGAAATCCTAGAATTTTCAATGTTGGATGGTGAGCTATATGTCAACTC

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125112258|gb|EL163408.1|EL163408
EST:     TGAAACCTCCCAGGAACAGGATTCGTGGTAAAGCAAAGAAACTGAAATCG                         AAAACAAAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGT
genomic: TGAAACCTCCCAGGAACAGGATTCGTGGTAAAGCAAAGAAACTGAAATCGgtaagcacct ... gtgttgccagAAAAC-AAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGT
EST: gi|86081663|gb|DR377420.1|DR377420
EST:     TGAAACCTCCCAGGAACAGGATTCGTGGTAAAGCAAAGAAACTGAAATCG                         AAAACAAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGTC
genomic: TGAAACCTCCCAGGAACAGGATTCGTGGTAAAGCAAAGAAACTGAAATCGgtaagcacct ... gtgttgccagAAAACAAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgactgttgtgttgagatgagatatactaatgtagcttttgctgtgttgccagAAAACAAGCTCTGGATTGAGTTCAAAATCAGCGAAGAAGAACCCGTGGGTCTAGAAATCCTAGAATTTTCAATGTTGGATGGTGAGCTATATGTCAACTC
                          tactaat  putative branch site (score: 1)
                       atatactaat  TA-rich tract