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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaatggaatgtcaagtgttttaactacttggcgcaagaaaaaggtttactggagagcacaaaataacgttacttctctgtttacttcttaaataaatagGTAAAATTAGCTAAAAAGGTGACTGAACAAGTAAGGCTACTTGCACAAGATGAACACGAGAATCTCGCTGAGCCTAGCGCTTATGATGTAGTCCCTCCAT

Basic information

species Arabidopsis thaliana
transcript AT5G15070.2
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15070.2 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA19G02260.1 (Glycine max), 3'ss of exon 19
--aaaatggaatgtcaagtgttttaactacttggcgcaagaaaaaggtttactggagagcacaaaataacgttacttctctgtttacttcttaa----ataaatagGTAAAATTAGCTAAAAAGGTGACTGAACAAGTAAGGCTACTTGCACAAGATGAACACGAGAATCTCGCTGAGCCTAGCGCTTATGATGTAGTCCCTCCAT
   |||| | | || |||  | |  |||  || ||     |||| || | | ||   | ||     ||   | |||||||  ||| | | |  |     | |||||||||| ||  |||| ||||| || |||||||||||  ||||||||||||||||| | ||||| ||  | ||    |||   ||||||||| | ||||| |
gtgaaattgcaagtaaagcctgtctactgtttagc-----aaaatggctaattgttaatcatgccttatt-taacttctcaattttcctatgtacattgtcaatagGTAAAGTTGACTAAGAAGGTTACCGAACAAGTAAGATTACTTGCACAAGATGAAAATGAGAAACTTACAGAAAGAAGCTTATATGATGTAATTCCTCCTT

upper sequence: AT5G15070.2 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 21
aaaatggaatgtcaagtgttttaactacttggcgcaagaaaaaggtttactggagagcacaaaataacgttacttctctgtttact--tcttaaataaatagGTAAAATTAGCTAAAAAGGTGACTGAACAAGTAAGGCTACTTGCACAAGATGAACACGAGAATCTCGCTGAGCCTAGCGCTTATGATGTAGTCCCTCCAT
    ||   | |  | |  || ||  |     | | ||  |||  |  | | | |    |    | |   |  || |  ||||  |  | |  | | |||||||||||||  |||| ||||| |||||||||||||| ||||| ||  | |||||| | ||||||||  | | | | ||  | ||||||||  | |||||||
-tggtgacttattgacttgttcaaagaagactcactagggaaatctaaattag-gtcttctttctgatactcattgttggtttcttaatttctattgaatagGTAAAATTGACTAAGAAGGTCACTGAACAAGTAAGACTACTAGCTAAGGATGAAGATGAGAATCTTTCAGTGACAAGTTCGTATGATGTGATTCCTCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactggagagcacaaaataacgttacttctctgtttacttcttaaataaatagGTAAAATTAGCTAAAAAGGTGACTGAACAAGTAAGGCTACTTGCACAAGATGAACACGAGAATCTCGCTGAGCCTAGCGCTTATGATGTAGTCCCTCCAT
                aaataac  putative branch site (score: 2)
                                       cttctta  putative PPT
                                 tgtttacttcttaaat  TA-rich tract