ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA

Basic information

species	Arabidopsis thaliana
transcript	AT4G02480.1
intron #	22
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23

gtatgt---ttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
||| ||   ||| |  |  | ||   |     || ||||      ||| ||| |   |  || |  | ||  ||||  ||||  ||              || |  |||||||| ||||||||||||| |||||||| || || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||| |||||||||
gtaagtaaattgtaattgatcaatcacaacgcct-ttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtg--------------ttgtatagGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 3'ss of exon 23

gtatgtttgaagatattaaaaagcgttctctg--ttctctcccacctttgaagccagtct---ttttatgtactttctcgatctgatga--ttgtggaaaatcattatt-cagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
             | | ||  |   || | |   ||  ||   |      | || ||  |   |||  | ||   | | ||  |  | |  || |    | || || ||  |||||||| ||||| |||||||| | || || ||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||||||| | |||||||
-------------tgtgaatcactcttttttatattgcctatgattcagcaggctagcatgattttggtttatcctgttgagtttcttactttctatccattcgtttttgtagGTTGATGGCATGCTGGGTAGAAGGGAGAACCCAGGGGAACATGAAGCTATGCGCAAGATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
||||| ||||  || |      |  || |        |  ||    |||      | | |||    ||  | | ||||     |   || ||   ||||   ||||||||||| ||| | || ||  | || ||||||||||| |||||||| ||||| |||||||| ||||| || ||||| || |||||||| ||| | || |
gtatgcttgagcatgtgggttggttttat--------tgtcattagtga------tttatttggtcacggtat-gatccatacaaaatgcaa---catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G157621_T02 (Zea mays), 3'ss of exon 22

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
      ||   ||| ||   || || || ||| |        ||| |||    |    || ||  |   |  | ||| ||     |||  |          | |||||||| ||||| ||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||| |||||||||||| | || ||||
-----gttagtgattttcttaa-cggtcactgatgatat--gcctatgacataataagttgtagcttactcattgatttgtgtcctgtata----------ttagGTTGATGGCATGCTGGGTAGACGTGAGAATCCAGGGGAACATGAGGCCATGCGCAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTTAGGACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G417650_T01 (Zea mays), 3'ss of exon 1

-----------------------------------------------------------------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctt----tgaagccagtctttttat-gtactttctcgatctgatgattgtggaaaat--------catta--------------ttcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                                                  ||   |||  |  ||| |  | | || ||||||   | | ||  |     ||  |||   | | | | ||   || || |||  ||  |  || | | |        ||||               || |||||||| |||||||||| || || || || || || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||| |||||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagcattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G168228_T01 (Zea mays), 3'ss of exon 2

-------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
         |  | ||  ||  || ||   ||| |  |||        | | | | ||||       |      |||||  | ||   | ||  ||     |  || || |||||||| |||||||||| || || || || || || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||| | |||||||
acttactccacctctgg-gactttgaa---cgtccaatgtggag----agcctggcagccgaggaggtgggaggctttcctgctc-atttatcctgccc--ttgtt-tttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 18

----------------------------------gtatgtttgaa-gatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtgg----aaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                   | | |||    ||| |  |  ||    |     | |||      | | || || || ||  |   ||||||   | ||   | ||  ||         | ||| || |||||||| ||||| |||| || || || || || || ||||||||||| |||||||||||||| || ||||| ||||| |||||||||||| | |||||||
gtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctc-atttatcctgctcttgtttttattttttagGTTGATGGCATGCTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGTAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G409190_T01 (Zea mays), 3'ss of exon 1

-----------------------------------------------------------------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctt----tgaagccagtctttttat-gtactttctcgatctgatgattgtggaaaat--------catta--------------ttcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                                                  ||   |||  |  ||| |  | | || ||||||   | | ||  |     ||  |||   | | | | ||   || || |||  ||  |  || | | |        ||||               || |||||||| |||||||||| || || || || || || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||| | |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcctatattgatgcatactttcctgctcatttatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCGGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G370521_T01 (Zea mays), 3'ss of exon 1

-----------------------------------------------------------------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctt-tgaagccagt-ctttttatgtactttct---cgatctgatgattgtggaaaat--------catta--------------ttcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                                                  ||   |||  |  ||| |  | | || ||||||   | | ||  |   | | ||   |  | |||||| ||| |   | |||  ||  |  || | | |        ||||               || |||||||| |||||||||| || || || || || || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||| | |||||||
gtacgtactggtctaattaaaggtgcatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatatgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G435582_T01 (Zea mays), 3'ss of exon 3

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
    || || |   |   | |||  | || |  |     | |||     ||      | | ||   ||||  |   | |  ||| |           || | ||||| ||||| ||| | || ||  | |||||||||||||| |||||||| ||||| ||||||||||| || || |||||||| |||||||| ||    || |
----gtatgcaagcac--acaagtttactttagtaatcactaccggcacag------tatataccaacttctttttttt--tgact-----------ttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCACACTA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G052403_T01 (Zea mays), 3'ss of exon 14

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                      |  | |             || || | |  || | ||     ||||  | |  | |   ||  | ||      | || | ||||| ||||| ||| | || ||  | |||||||||||||| |||||||| ||||| ||||||||||| || || |||||||| ||||||||  |  | || |
----------------------gtatgcaagcagacaggttacattagtaaacactgttg----gtacagtgtacaccaactgtctttga-----ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGACTGCGCACTA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 8

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
    || || |   |   | |||  | || |  |  |  | |||     ||      | | ||   ||||| |   | |||              | || | ||||| ||||| ||| | || ||  | |||||||||||||| |||||||| ||||| ||||||||||| || || |||||||| |||||||| ||  | || |
----gtatgcaagcac--acaagtttactttagtaaccactaccggcacag------tatataccaactttttt--tttga--------------ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G482077_T01 (Zea mays), 3'ss of exon 1

-----------------------------------------------------------------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctt----tgaagccagtctttttat-gtactttctcgatctgatgattgtggaaaatc---------attattc-------------agGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                                                  ||   |||  |  ||| |  | | || ||||||   | | ||  |     ||  |||   | | | | ||   || || |||  ||  |  || | | |           ||||||             |||||||| |||||||||| || || || || || || ||||||||||| ||||| |||||||| || ||||| ||||| |||||||||| | | |||||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatttattctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGATCTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G354532_T01 (Zea mays), 3'ss of exon 2

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
    || || |   |   | |||  | || |  |  |  | |||     ||          ||| |||   ||   | |  ||| |           || |  |||| ||||| ||| | || ||  | |||||||||||||| |||||||| ||||  ||||||||||| || || |||||||| |||||||| ||  | || |
----gtatgcaagcac--acaagtttactttagtaaccactaccggcacag----------tatataccaacttctttttttgact-----------ttctggagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCACAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 2

--------------------------------------gtatgtttgaag-atattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                         | ||| ||   || ||  |  |   |    || |         |  |  ||| | ||  |   |||||||| | ||      || |        | | || |||||||| ||||| |||| || |  || || ||  | ||||||||||| ||||| |||||||| || ||||  ||||| |||||||||||| | |||| ||
gtaagttatagtagtgttgtgattcatgtacattttctacttatttcaattgtactaggacaccaccatatttgtagtttgttgtcaattcca-tattgatgcatactttcttgctc----atttatcatgccctagtttttagGTTGATGGCATGCTGGGAAGGCAGGAGAACCCTAGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTCTATGGTGAACTGGGATGGTCTCAGAAGAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA02G17400.1 (Glycine max), 3'ss of exon 19

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatg-attgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
       |||  || | | ||     | | | |  |      | | |  ||  | ||||  | |  | | |||   | ||||   || ||  | ||   |   ||||||||||| ||||| || |||||||||||||| || |||||||| ||||||||||| |||||||| || |||||||| || ||||||||||| |||||||
----aaatgagcat-tcagaatctagtgtttttctttggtagcttctacagatattcttgctttcaattatctgtgtttgatttgttttgtgacattggtgg-cagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAACATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGAGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 19

gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
    | || || ||||| |||     | | | |  |      | | |   |  | ||||  | |  | | |||   | ||||       |  | | ||    ||||||||||| ||||| || |||||||||||||| || || ||||| ||||||||||| |||||||| || |||||||| || |||||||||||  ||||||
---ggcttaaacatattcaaatctagtgtttttctttggtagcttctacggatattcttagtttcaattatctgtgtttgatttgctgtgttactgatgg--cagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 22

-gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
 | |    | || || | ||    |  | | |  |     | || | ||||     ||||  | |  | | |||   |    |  |||||| || |  |    ||||||||||| ||| | || ||||||||||| ||  | || ||||| |||||||| || ||||| || ||||| |||||||| ||||||||| |  | ||||
tgaagacctaaacatttaaatctccaattttttatgatagctac-tatgaattt--tcttagtttcaattatctgtgttgatttgttgtggcaa-ttgtgg--cagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 18

-gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
 | |    | || || |||||   | |  | | |    |  |  || || |     ||||  | |  | | |||   |    |  |||||| || |  |    ||||||||||| ||| | || ||||||||||| ||  | || ||||| |||||||| || ||||| || ||||| |||||||| ||||||||| |  | ||||
tgaagaactaaacat-ttaaatctcatattttttatggtagctactatggattt--tcttagtttcaattatctgtgttgatttgttgtggcaa-ttgtgg--cagGTTGATAGTATGCTTGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 22

-----------------------------------------------------------------------------gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattatt-cagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
                                                                                ||   | |  | || ||     ||   |   |  ||  | ||||     |  |||| || |    ||     || |  || |     | | | ||| || |||||||| |||||||| || ||||||||||||||||| ||||||||||||||| | || |||||||| ||||||||||| |||||||||||  || | ||||
gtaagttgaataaatctttaaattcatccacaacttttgctataatgttcctcactctttttatgggtccatggatttagtgacggtaactgttcaatccttttaattcgccattctgatctttagtttctttcttcttttcctgttaaaaaatttattgttaacttagatttattgtttcagGTTGACAGCATGTTAGGGAGACGTGAAAATCCAGGAGAACATGAAGCTATGAGGAAAATGAAGAATGAGTTCATGGTGAACTGGGATGGCCTACGTACAA

upper sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: PP1S3_184V6.1 (Physcomitrella patens), 3'ss of exon 19

gtatgtttgaagatattaaaaagcgttct-ctgttctctcccacctttgaagccagtctt---tttatgtactttctcgatctgatgattgtggaaaatcattatt--cagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA
          |  |||         || |  |  | | ||  |  | ||||   ||| |    |  |||| ||||   || | | | |||     |  | | | |    |||| || || ||| | ||  | ||||  ||       |||||    |||||||||||| ||||||||||||| ||||  | ||||||||||||  | || |
----------aattatccggttaatttatgttactatttcatatatgtgaatgtagtataaaatcaatgtgcttttaaga-cggctaatttcaacatcttaatgtgggtagGTGGACAGTATGCTTGGGCGGCGTGGGAAAGATACTGAACACTCGGCTATGCGTAAGTTGAAGAACGAGTTTATGGCTAGCTGGGATGGTTTGCGTACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|124734802|gb|EH826204.1|EH826204

EST:     AGTGTCATTTTTGTTGATGAG                         GTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG
genomic: AGTGTCATTTTTGTTGATGAGgtatgtttga ... cattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG

EST: gi|86063353|gb|DR359110.1|DR359110

EST:     TCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAG                         GTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG
genomic: TCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAGgtatgtttga ... cattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG

EST: gi|86063355|gb|DR359112.1|DR359112

EST:     TCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAG                         GTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG
genomic: TCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAGgtatgtttga ... cattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

gccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA

                         atctgat  putative branch site (score: 4)
       tttttatgtacttt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns