1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaaaagttaatttaaaatatgggtttcttgaagaaccagcttctacaaaaccactgatttattacacttcttttttggggggttggatcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGTGAGAACCTTCAGACATGTTCTACACTTCATGGAGATGCCTTTAATTCTG
species | Arabidopsis thaliana |
transcript | AT3G08960.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: GGTCTCAAGGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAAAAGTCAG ATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGTEST: gi|116376078|gb|EG418670.1|EG418670
genomic: GGTCTCAAGGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAAAAGTCAGgtaaaagtta ... tcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGT
EST: GGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAACAGTCAG ATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGTEST: gi|116427659|gb|EG470251.1|EG470251
genomic: GGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAAAAGTCAGgtaaaagtta ... tcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGT
EST: GGTCTCAAGGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAAAAGTCAG ATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGT
genomic: GGTCTCAAGGAGAAGAAACCCCGCCAAGCAAAGAGTTACGGAAAAGTCAGgtaaaagtta ... tcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGT
ctacaaaaccactgatttattacacttcttttttggggggttggatcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGTGAGAACCTTCAGACATGTTCTACACTTCATGGAGATGCCTTTAATTCTG
cactgat putative branch site (score: 3)
tcttattt putative PPT
tgatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagttaatttaaaatatgggtttcttgaagaaccagcttctacaaaaccactgatttattacacttcttttttggggggttggatcttatttagATAAAAGTTTCCGACCCAATCTACCAGATGTCACTAGAGAACTCAACGCGTGAGAACCTTCAGACATGTTCTACACTTCATGGAGATGCCTTTAATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG