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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttcagactaataaccatttatcttctttgataacatggttgattcgtttcctttctaacaaagcatcatagtcatactaatattagcgctttttgagagaagcagtggttgattgtttggttctctgatttggttgcagACTCTGCAGAGAAAGAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGAGAGTTTTTGGTAAATAGTATTGTTGGCTCTTTTGTTTCTTCTCTGGCCT

Basic information

species Arabidopsis thaliana
transcript AT5G08440.2
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116441739|gb|EG484331.1|EG484331
EST:     CTCAAGAGATACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG                         ACTCTGCAGAGAAAGAAGGGAAAGAAAAAAGGATTTTTGTTTAACAAATGA
genomic: CTCAAGAGATACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAGgtaatgtttc ... ttggttgcagACTCTGCAGAGAAAGAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgctttttgagagaagcagtggttgattgtttggttctctgatttggttgcagACTCTGCAGAGAAAGAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGAGAGTTTTTGGTAAATAGTATTGTTGGCTCTTTTGTTTCTTCTCTGGCCT
                                      ctctgat  putative branch site (score: 4)
     tttttga  TA-rich tract