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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatcttttagatttccaccgtaatcacgactttaaagcattcacagtgatataaccagattgtttcattattttgtcacaacacagGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125130995|gb|EL173884.1|EL173884
EST:     GATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAG                         GTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGC
genomic: GATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAGgtaaaaatct ... cacaacacagGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGC
EST: gi|19741419|gb|AU226772.1|AU226772
EST:     AATTCAAAGAATGGATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAG                         GTTCTTTATGATATTTTCCGGTATGATCTACGTTTGTG-AAAGCATATAGC
genomic: AATTCAAAGAATGGATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAGgtaaaaatct ... cacaacacagGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagcattcacagtgatataaccagattgtttcattattttgtcacaacacagGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG
                 atataac  putative branch site (score: 3)
                                       ttttgtc  putative PPT
                           attgtttcattatttt  TA-rich tract