1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' |
gtttttccctctgtttgatatgtcattttattgtgtatcagtcacgttttggtcaacaagatcgaaactgtttctgaaagaccgtactatcttctcaaaggaaataagtactcttctcaaatattttttgtaataattttaacagttttgatttctctaatttctttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGACCAAGTCTCCTCTGAAGATTTCCCTTGGATGACTGATGGAGCTGGACTTC
species | Arabidopsis thaliana |
transcript | AT3G01310.2 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TGCCAGCATTGAAATGGAAGCGGCCAAG GCTAGATTGAATGAGATTGTAACGTCNGGCACAAAGATGATAGACGACGACEST: gi|125327706|gb|EL341786.1|EL341786
genomic: TGCCAGCATTGAAATGGAAGCGGCCAAGgtttttccct ... ttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGAC
EST: TTGGATGGTCTTGATAATGCCAGCATTGAAATGGAAGCGGCCAAG GCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGEST: gi|164018012|gb|ES008205.1|ES008205
genomic: TTGGATGGTCTTGATAATGCCAGCATTGAAATGGAAGCGGCCAAGgtttttccct ... ttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACG
EST: GCCAGCATTGAAATGGAAGCGGCCAAG GCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGAC
genomic: GCCAGCATTGAAATGGAAGCGGCCAAGgtttttccct ... ttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGAC
atattttttgtaataattttaacagttttgatttctctaatttctttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGACCAAGTCTCCTCTGAAGATTTCCCTTGGATGACTGATGGAGCTGGACTTC
tttctctaatttcttt CT-rich tract
ttttgtaataatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttccctctgtttgatatgtcattttattgtgtatcagtcacgttttggtcaacaagatcgaaactgtttctgaaagaccgtactatcttctcaaaggaaataagtactcttctcaaatattttttgtaataattttaacagttttgatttctctaatttctttccctgcagGCTAGATTGAATGAGATTGTAACGTCTGGCACAAAGATGATAGACGACGACCAAGTCTCCTCTGAAGATTTCCCTTGGATGACTGATGGAGCTGGACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA