Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcaaatctctctacacgttaaatatttatctatctcaatttaattttttctcataccgtcaagctgtttctactatgacagGCGATATCTTGTGCAGATATGATTGTTGTGATGGACAAAGGAAAAGTGAATTGGTCAGGAAGTGTTACTGATATGCCCAAATCCATTTCTCCAACATTTT

Basic information

species Arabidopsis thaliana
transcript AT2G07680.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07680.1 (Arabidopsis thaliana), 3'ss of exon 21
lower sequence: GLYMA13G44750.1 (Glycine max), 3'ss of exon 14
-----gtctcaaatctctctacacgttaaatatttatctatctcaatttaattttttctcatac---cgtcaagctgtttctac-tatga---------cagGCGATATCTTGTGCAGATATGATTGTTGTGATGGACAAAGGAAAAGTGAATTGGTCAGGAAGTGTTACTGATATGCCCAAATCCATTTCTCCAACATTTT
      | |  |     | |  |  ||| |||||| | ||| ||  |  ||  | | ||  |||     | ||  ||||  |   | |||         ||||| ||||||| ||| |||||||||||||| |||||||| |||    | || |||   |||| |    ||||  | || |  ||   || | ||  ||| |
gagtatttttcagaagatatgta-attatatattt-tgtatatctgtaaaaggtgtacttgtacaaggattaaattgttggtgtatctgaatttacatgcagGCAATATCTTCTGCTGATATGATTGTTGTAATGGACAAGGGACGCATAAAGTGGATGGGAAATTCAGCTGACTTTCCAATTTCTTCTTATACAGAATTCT

upper sequence: AT2G07680.1 (Arabidopsis thaliana), 3'ss of exon 21
lower sequence: Vv09s0018g00310.t01 (Vitis vinifera), 3'ss of exon 13
---gtctcaaatctctc-tacacgttaaatatttatctatctcaatttaattttttctcatacc--gtcaagc---------tgtttctactatga-cagGCGATATCTTGTGCAGATATGATTGTTGTGATGGACAAAGGAAAAGTGAATTGGTCAGGAAGTGTTACTGATATGCCCAAATCCATTTCTCCAACATTTT
   || |   ||||    | |   || ||  | |  || || |||  || |  | |  || ||   ||  ||          | |||||||      ||||| || |||| ||| ||||||||||| ||||||||||||||| | ||||| |||   || |||   |||||  |  |    ||    | | | ||||| |
aatgtttatgatcttgaatgctgttttaacttatgactttcacaaactagtggtcttccaaacaaagttgagaattattcagtatttctacatcattcagGCAATGTCTTCTGCTGATATGATTGTGGTGATGGACAAAGGACACGTGAAGTGGGTGGGGAGTTCAACTGACTTTTCTGTTTCTTCATATTCTACATTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctatctcaatttaattttttctcataccgtcaagctgtttctactatgacagGCGATATCTTGTGCAGATATGATTGTTGTGATGGACAAAGGAAAAGTGAATTGGTCAGGAAGTGTTACTGATATGCCCAAATCCATTTCTCCAACATTTT
           atttaat  putative branch site (score: 4)
                                        tttctact  putative PPT
        tcaatttaattttttc  TA-rich tract