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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtgcttaagttgtgaccttggtgaatctctgtagatgcattcagttccaactttgttggtccattaattgatttttctttatattatcttatttgcagATATGCAGACACTGTGGTGGGGGAGACTGGGTGGTGCAAAGCGGAGTGAAATGCAATTCCCTTGCGTGCTCAGTCTTTTACGAGAGACGGAAAGTTCAGA

Basic information

species Arabidopsis thaliana
transcript AT1G67500.2
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67500.2 (Arabidopsis thaliana), 3'ss of exon 21
lower sequence: Vv14s0128g00840.t01 (Vitis vinifera), 3'ss of exon 9
gtgtgcttaagttgtgaccttggtgaatctct--gtagat---gcattcagttccaact--ttgttggtccattaattgatttttctttatattatcttatttgcagATATGCAGACACTGTGGTGGGGGAGACTGGGTGGTGCAAAGCGGAGTGAAATGCAATTCCCTTGCGTGCTCAGTCTTTTACGAGAGACGGAAAGTTCAGA
   | ||    |  | |  |   ||||| |    | | ||    ||   | |||| |||  || || ||  |  ||||| ||        | || | | |||||||||||||| |||| || || || ||||| ||| | ||| ||||||| ||||| ||||  || ||||| |||||||| || || || ||||||||||||||||
---ttctgtgttcatcat-tcattgaattttccagcaaatcatacaagaacttcccactgcttcttagtgaac-aattggttaaag--ggtgttgtttaatttgcagATATGCCGACATTGCGGAGGTGGAGATTGGATCGTGGAAAGCGGGGTGAAGTGCACATCACTTGCATGCTCAGTGTTCTATGAAAGACGGAAAGTTCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccaactttgttggtccattaattgatttttctttatattatcttatttgcagATATGCAGACACTGTGGTGGGGGAGACTGGGTGGTGCAAAGCGGAGTGAAATGCAATTCCCTTGCGTGCTCAGTCTTTTACGAGAGACGGAAAGTTCAGA
                                           tcttattt  CT-rich tract
                tccattaattgatttt  TA-rich tract