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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattttgaaaatctacctcagaatttatgtgtgttataagcatcatttagtcaacggtatgttttcatttttatttttcagGAGGCTCACAAGCGAAATAACAACTGGCTTCCACCGGCTTGGGCGATCGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAA

Basic information

species Arabidopsis thaliana
transcript AT5G45160.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124883750|gb|EH962652.1|EH962652
EST:     AGTTCAAATCTGAGACCGAGTATACTGTAACCCAAGCTATTTCGGCACAG                         GAGGCTCACAAGCGAAATAACAACTGGCTTCCA
genomic: AGTTCAAATCTGAGACCGAGTATACTGTAACCCAAGCTATTTCGGCACAGgtgattttga ... tatttttcagGAGGCTCACAAGCGAAATAACAACTGGCTTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtgttataagcatcatttagtcaacggtatgttttcatttttatttttcagGAGGCTCACAAGCGAAATAACAACTGGCTTCCACCGGCTTGGGCGATCGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAA
                                   ttttcatttttatttt  CT-rich tract
                               tatgttttcattttta  TA-rich tract