Sequence
atgc intronic sequence ATGC exonic sequencegtataaatagtttctacttccctcgattctttcattgcaataaactaagtttacatgatagatatgagaattgtttttcacttatgatttacatgaagtatcaatatttctcgtaaaccataaaataaacagtacatgtccaacatacacacacatggttgctgagttcttatgaaatcgtggtgttgcagATTGATGTAGATATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGCCTCATTGTTGATCTCGCCATCTTGATTG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G35180.2 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G35180.4 (Arabidopsis thaliana), 3'ss of exon 23
lower sequence: GLYMA15G26120.1 (Glycine max), 3'ss of exon 8
gtataaatagtttctacttccctcgattctttcattgcaataaactaagtttacatgatagatatgagaattgtttttcacttatgatttacatgaagtatcaatatttctcgtaaaccataaaataaacagtacatgtccaacatacacacacatggttgctgagttc-ttatgaaatcgtggtgttgcagATTGATGTAGATATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGCCTCATTGTTGATCTCGCCATCTTGATTG
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--------------------------------------------------------------------------------------aattggtcatggaattga-acttca-atttacctttaacttatctgccattgtc----ataatttctagtggattccactttgattacaatttctgtgttatgcagATAGATGTAGATATTGGATCATCCTCTGTAGCAAGGAGTGTCATTGGCCTTGTTCTAGGATATGTCACAAGCCTAGTTGTTGACCTTGCAATTTTGATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164216255|gb|ES063434.1|ES063434EST: CGGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAACTTTTTTGGAG ATTGATGTAGATATTGGATCATCGGCTGTTGCGAGGAGCGTTATTG
genomic: CGGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAAC-TTTTTGGAGgtataaatag ... ggtgttgcagATTGATGTAGATATTGGATCATCGGCTGTTGCGAGGAGCGTTATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtccaacatacacacacatggttgctgagttcttatgaaatcgtggtgttgcagATTGATGTAGATATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGCCTCATTGTTGATCTCGCCATCTTGATTG
ttatgaaat TA-rich tract