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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgccaaactttataatatatggttgacttgtgtgcacgactttgcagtttttacattgattgaaaatgctgttaactgtgatactattgaacctcgtaatattagGACAAGACAACCCCTGGATGACATTTCTCGAAGACCATGTATTCGAATCAGAAGAATATTTATTCCTTGAATTGCATGCAACTGCGATGCTCTGTTTGCC

Basic information

species Arabidopsis thaliana
transcript AT3G14120.3
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14120.2 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv09s0002g00840.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtgatgccaaactttataatatatggttgacttgtgtgcacgactttgcagtttttacattgattgaaaatgctgttaactgtgatactattgaacctcgtaatattagGACAAGACAACCCCTGGATGACATTTCTCGAAGACCATGTATTCGAATCAGAAGAATATTTATTCCTTGAATTGCATGCAACTGCGATGCTCTGTTTGCC
     ||| |   |  ||| | ||  ||| ||  |||   | || || |||      | |  ||||| |    ||| | | | || | | |    | ||  || |  ||  |||| | || || || ||| ||   |     ||| |  || | |  |||||    |||  | ||||||| ||||||||||||||||| ||||||||| ||||
---gatga-gtttaggtttgtcatgcatgtttt-cttccattcatgagttt------tctggattgaattgttatgatttgacctatta-atggcttaaattctttgtac-agGAAAGGAAAATCCTTGGTTGGTTTCAGATGAAAATAATATTTATGAATCGATGGAACCTGTATTCCTAGAATTGCATGCAACTGCAATGCTCTGTCTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125040487|gb|EL112756.1|EL112756
EST:     AGACTCTGGATTCTTCTTTGTCATTGCTTCTCA                         GACAAGACAACCCCTGGATG-CATTTCTCGAAGACCATGTATTCGAATCAG
genomic: AGACTCTGGATTCTTCTTTGTCATTGCTTCTCAgtaagtgatg ... gtaatattagGACAAGACAACCCCTGGATGACATTTCTCGAAGACCATGTATTCGAATCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacattgattgaaaatgctgttaactgtgatactattgaacctcgtaatattagGACAAGACAACCCCTGGATGACATTTCTCGAAGACCATGTATTCGAATCAGAAGAATATTTATTCCTTGAATTGCATGCAACTGCGATGCTCTGTTTGCC
                   tgttaac  putative branch site (score: 2)
                                              taatatta  TA-rich tract