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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgactgatgtgattagcattaaacatttctcctgaaacgaaaactgagtaataacttacaatgtttatttaattttctgtgttttgcagATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAGAAGACAGAACATAAGAATGTTGTTTGTGTGTCTCTTACATTGATTTGAT

Basic information

species Arabidopsis thaliana
transcript AT1G53165.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124983110|gb|EL055865.1|EL055865
EST:     TTTAGTTCTAATGCAAACTTTAGTCCACTTGCAAGATTCTTATTCTCAAG                         ATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAG
genomic: TTTAGTTCTAATGCAAACTTTAGTCCACTTGCAAGATTCTTATTCTCAAGgtttgactga ... tgttttgcagATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAG
EST: gi|124797273|gb|EH886952.1|EH886952
EST:     TTTAGTTCTAATGCAAACTTTAGTCCAC-TGCAAGATTCTTATTCTCAAG                         ATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAG
genomic: TTTAGTTCTAATGCAAACTTTAGTCCACTTGCAAGATTCTTATTCTCAAGgtttgactga ... tgttttgcagATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAG
EST: gi|125042762|gb|EL115031.1|EL115031
EST:     TTTAGTTCTAATGCAAACTTTAGTCCACTTGCAAGATTCTTATTCTCAAG                         ATGGCTAAGGTCAAACATCGCGTGATCTTAACCAAAG
genomic: TTTAGTTCTAATGCAAACTTTAGTCCACTTGCAAGATTCTTATTCTCAAGgtttgactga ... tgttttgcagATGGCTA-GGTCAAACATCGCGTGATCTTAACCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacgaaaactgagtaataacttacaatgtttatttaattttctgtgttttgcagATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAGTTGAGAAACTCACAGAAGACAGAACATAAGAATGTTGTTTGTGTGTCTCTTACATTGATTTGAT
                                      ttttctgt  CT-rich tract
            agtaataacttacaat  TA-rich tract