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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcacaaatacttctcattccgagatttggcaaactatggagtatgaatcacccactaaatcaaagtaatcttttactttcttcttgtgtcccacagAAATTGAAGCTTTTGACTGCAAATGATGATTTATCTTTAGACGATCTCCAAATATGAGAATCCAGATCTCAAATCAAATCCCTGTCTTTGTTCTCTTTTG

Basic information

species Arabidopsis thaliana
transcript AT1G12360.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740891|gb|AU226244.1|AU226244
EST:     AAGTAATCCTCGGTTCCACGAGCCTGGACGATCCTCCACAGTTCATAACG                         AAATTGAAGCTTTTGACTGCAAATGATGATTTATCTTTAGACGATCTCCAA
genomic: AAGTAATCCTCGGTTCCACGAGCCTGGACGATCCTCCACAGTTCATAACGgtaagcctca ... tgtcccacagAAATTGAAGCTTTTGACTGCAAATGATGATTTATCTTTAGACGATCTCCAA
EST: gi|125266059|gb|EL280144.1|EL280144
EST:     AAGTAATCCTCGGTTCCACGAGCCTGGACGATCCTCCACAGTTCATAACG                         AAATTGAAGCTTTTGACTG
genomic: AAGTAATCCTCGGTTCCACGAGCCTGGACGATCCTCCACAGTTCATAACGgtaagcctca ... tgtcccacagAAATTGAAGCTTTTGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaatcacccactaaatcaaagtaatcttttactttcttcttgtgtcccacagAAATTGAAGCTTTTGACTGCAAATGATGATTTATCTTTAGACGATCTCCAAATATGAGAATCCAGATCTCAAATCAAATCCCTGTCTTTGTTCTCTTTTG
           cactaaa  putative branch site (score: 2)
                           tcttttactttcttct  putative PPT
              taaatcaaagtaat  TA-rich tract