Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataagcatatttgaggctcttatacttggggtggattaagagggataagcaattttggtgtctcttttgtagGTTATGCTTATGAGGAAATGTCAGAGATATCTCCTGACCATAAATTTCTAGCATATACTATGTATGATAAGGATAACGATTACTTTAAGTTGTGTGTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G66960.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G06940.1 (Glycine max), 3'ss of exon 1
--------------------gtaaataagcatatttgagg-ctcttat-acttggggtggattaagagggata--agcaattttggtgtctcttttgtagGTTATGCTTATGAGGAAATGTCAGAGATATCTCCTGACCATAAATTTCTAGCATATACTATGTATGATAAGGATAACGATTACTTTAAGTTGTGTGTGAG
                      | | | |  |||||| |  ||  |||   ||||  |||  | ||   | ||  |    |||||       ||||||||||||||||||||||||| |||| ||| | || ||  | ||| | ||||| |||||||||||||||||||| || || || ||||| || || |  |||||
aacccttggctacatgtttaagagacatggttatttgcgaactaatattggttggattggtattagtttgctaacaattgttttgaccggctttttgtagGTTATGCTTATGAGGAACTGTCTGAGGTTTCGCCGAATCATCAGTTTCTTGCATATACTATGTATGATAAAGAAAATGACTACTTCAAATTATCCGTGAG

upper sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0255g00060.t01 (Vitis vinifera), 3'ss of exon 2
----------------gtaaataagcatatttgaggctcttatacttggggtggat--taagagggataagcaatt-ttggtgtctctt-----ttgtagGTTATGCTTATGAGGAAATGTCAGAGATATCTCCTGACCATAAATTTCTAGCATATACTATGTATGATAAGGATAACGATTACTTTAAGTTGTGTGTGAG
                     ||  | | ||    ||    | ||   || || ||  ||    |  |   | |||  ||   ||| ||     ||  ||| ||||| ||||||||| | ||||||||||| || |||||||  ||| | || || ||||||||||||||||| ||||| ||||||| ||| | ||| ||
tttcttcttttccttttcctttatcctttttctctgcgaccagacagaggatgaatattattttgctttgactattactgacttctattccaatttacagGGTATGCCTATGAGGAACTATCAGAGATATCACCAGACCATAGGTTTATCGCCTACACTATGTATGATAAGGACAACGACTACTTTAGGTTATCTGTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatacttggggtggattaagagggataagcaattttggtgtctcttttgtagGTTATGCTTATGAGGAAATGTCAGAGATATCTCCTGACCATAAATTTCTAGCATATACTATGTATGATAAGGATAACGATTACTTTAAGTTGTGTGTGAG
                                         tgtctctttt  CT-rich tract
                                 aatttt  TA-rich tract