1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatcccttaattagggggcttttgattgtattttttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgagGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTG
species | Arabidopsis thaliana |
transcript | AT5G66190.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAAEST: gi|86051159|gb|DR346914.1|DR346914
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051159|gb|DR346914.1|DR346914
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051159|gb|DR346914.1|DR346914
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051164|gb|DR346919.1|DR346919
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051164|gb|DR346919.1|DR346919
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051164|gb|DR346919.1|DR346919
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG TEST: gi|86051165|gb|DR346920.1|DR346920
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG WEST: gi|86051165|gb|DR346920.1|DR346920
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG WEST: gi|86051157|gb|DR346912.1|DR346912
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG KEST: gi|86051157|gb|DR346912.1|DR346912
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG KEST: gi|86051157|gb|DR346912.1|DR346912
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG KEST: gi|86051162|gb|DR346917.1|DR346917
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAAEST: gi|86051160|gb|DR346915.1|DR346915
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGEST: gi|86051158|gb|DR346913.1|DR346913
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: GGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGEST: gi|86078472|gb|DR374229.1|DR374229
genomic: GGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGEST: gi|86051156|gb|DR346911.1|DR346911
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG WEST: gi|86051156|gb|DR346911.1|DR346911
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG WEST: gi|86051163|gb|DR346918.1|DR346918
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
tagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgagGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTG
ggttgat putative branch site (score: 5)
atttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcccttaattagggggcttttgattgtattttttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgagGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA