ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gttgaataactaatcatgcttgttttttgtgtgttagttcagtgagttgggggatttatatcttgttttacttaactacattggtcttatgcagCCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCATCGCTCAGTG

Basic information

species	Arabidopsis thaliana
transcript	AT5G65620.1
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT5G65620.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G33490.1 (Glycine max), 3'ss of exon 2

----gttgaataacta-atcatgcttgttttttgtgt-gttagttca--gtgagttgggggatttatatcttgttttacttaactacattggtcttatgcagCCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCATCGCTCAGTG
    |  |  |   || ||| ||  ||| ||| |  |  | || |||   | || |  ||  |   ||    |  ||| |  |  || ||  | || ||||| |||| ||||| ||||| ||||| ||  |||| |||||||| |||||||| ||||| || ||||| ||||  || ||||||||||||    | |||||||
tgggggggggtgtatatatcttgtgtgtgtttcggattatgaggtcatcatcagctttggtgtgc-taagaaggattagtggataacttttttgtt-tgcagGCAGAAAAAGTTAAGTTTCAGCTTAGACTGGGTCAAAGCAAACCTATTTATAATGCATTCAAAGCCATTCAGGAGTCTCCTGATTGGCAGACACTCAGTG

upper sequence: AT5G65620.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv06s0061g01070.t01 (Vitis vinifera), 3'ss of exon 2

gttgaataactaatcatgcttgttttttgtgt--gttagttcagtgagttgggggatttatatcttgttttactt--aactacattggtct-tatgcagCCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCATCGCTCAGTG
             ||    || ||||| |||      | |  | | |    |  |  ||  || |||||  | ||  | ||  |||| | | | | |||||||  || ||  | || |||||||||||||| |||||||| || ||||| ||||| || | ||||||||| |||||| | ||||||  | | || | ||
------------gtctgtgttatttttagtgcccacaaatgaaataaagacgatgtcttcaatgttgttgaatttccacctgaattgttttgtctacagCCAGCAAAGGTTGAATTTCAGCTCAGGTTGGGCCAAAGCAAACCCATTTATAATGCATTCAGAGCTATTCGAGAATCTTCAGATTGGGAAGCTCTGAATG

upper sequence: AT5G65620.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 2

gttgaataactaatcatgctt--gttttttgtgtgttagttcagtgagttgggggatttatatcttgttttacttaactacattggtcttat-----gcagCCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCATCGCTCAGTG
 || || ||          ||  || |  ||| | | | ||        |      | |  || |  || ||||||| |   ||  | || |     ||||||||| || || || ||  |||| ||||||||||||||||| || ||||| ||||| |||||||||||||  ||||||||||| |||  | | || ||||
-tttaacaatggcctcccattaagtatgatgtctatgaattgtacactctttattttctccatttatttctacttaattcttttttttttttaaattgcagCCAGACAAGGTCAAATTTGAGCTTAGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|124733110|gb|EH824512.1|EH824512

EST:     CTGTCAAGGACACACCTGAGCTACGTGCTGCCATCGAAGACGTTCAG                         CCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTA
genomic: CTGTCAAGGACACACCTGAGCTACGTGCTGCCATCGAAGACGTTCAGgttgaataac ... tcttatgcagCCAGAGAAAGTGAAGTTCCAGCTCAGGTTGGGGCAAAGCAAGCCTATTTA

EST: gi|124851551|gb|EH935988.1|EH935988

EST:     TACGTGCTGCCATCGAAGACGTTCAG                         T
genomic: TACGTGCTGCCATCGAAGACGTTCAGgttgaataac ... tcttatgcag-