1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcacactactttctatcgatttagcttttgaaacctgcttgtggtagtttaaggttttcgattacttggaacggtttctactgagttctgaatcttactgagaaattgaatgaagaactgagtgagatattgaaagtggttaggtctcttgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTG
species | Arabidopsis thaliana |
transcript | AT5G64760.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAACGAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAG GCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAEST: gi|164063605|gb|ES187710.1|ES187710
genomic: TCAACGAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGgtcacactac ... tgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTA
EST: TGGTCAGCTTAAGCAG GCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAEST: gi|86044899|gb|DR340654.1|DR340654
genomic: TGGTCAGCTTAAGCAGgtcacactac ... tgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTA
EST: TCAACGAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAG GCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTA
genomic: TCAACGAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGgtcacactac ... tgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTA
attgaatgaagaactgagtgagatattgaaagtggttaggtctcttgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTG
tcttgat putative branch site (score: 4)
tctctt CT-rich tract
atattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacactactttctatcgatttagcttttgaaacctgcttgtggtagtttaaggttttcgattacttggaacggtttctactgagttctgaatcttactgagaaattgaatgaagaactgagtgagatattgaaagtggttaggtctcttgatttgcagGCTGTACAATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT