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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttgtttgttagaccaaatttctttggttttttgtgaatgtagaagattttctgatttgttcggcctatgttgttgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTC

Basic information

species Arabidopsis thaliana
transcript AT5G64740.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 2
-----gttcgttgtttgttagaccaaattt-ctttggttttttgtgaatgtagaagattttctgatttgttcggcctatgttgttgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGG-GATTGGATTTGATCAGGTTTC
      || ||| | || |        ||  || |||| | |||| | ||| |  ||  || |  |    |    |       |   |||  ||| ||||| || |||||||| ||||||||||||||||||| |||||| || |||||||||||||| |||||  ||  ||  | |  |     |  |    | 
gtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgc-agGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGACACTGATGACTTGGACAATGAGTTTGATTATGGGGATGTTGATGCTCTGGGCCCACAACCAAT-

upper sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 2
---------gttcgttgtttgttagaccaaatttctttggttttttgtgaatgtagaagattttctgatttgttcggcctatgttgt-tgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGG-GATTGGATTTGATCAGGTTTC
         | |   | |||  |       | |    |   || ||     ||| ||| | |||||    |     |   ||| ||  ||  |   ||| ||||| || |||||||| ||||||||||||||||| | |||||| || |||||||||||||| |||||  ||| ||  | || |     |  |    | 
gtgagattggctttgtatttcctttctttgactctggtatcttgttactgttgtggaaaaatttct----tacagcgttaatgatgaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGGACAATGAGTTTGATTATGGGGATATTGATGCTTTGGGCCCACAACCAAT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgaatgtagaagattttctgatttgttcggcctatgttgttgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTC
                    ttctgat  putative branch site (score: 3)
              aagatttt  TA-rich tract