1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgtatcttattactctcttttttatcatgattcatatcaagattcaatcttacaattcatgtttccgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTT
species | Arabidopsis thaliana |
transcript | AT5G64380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCG AACGATATCGCCTTGTCCTCTCTTAGAA-CTCAGGTAAAGTAGCAGTAATGEST: gi|86020275|gb|DR316021.1|DR316021
genomic: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCGgtctgtatct ... cgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATG
EST: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCG AACGATATCGTCTTGTCCTEST: gi|86020280|gb|DR316026.1|DR316026
genomic: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCGgtctgtatct ... cgttttgcagAACGATATCGTCTTGTCCT
EST: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCG AACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATGEST: gi|86020279|gb|DR316025.1|DR316025
genomic: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCGgtctgtatct ... cgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATG
EST: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCG AACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATG
genomic: CCTCTAGTGGGTCAGACCGAGATGCGCCTAAGCCGCTCGATATTGTCTCGgtctgtatct ... cgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATG
tttatcatgattcatatcaagattcaatcttacaattcatgtttccgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTT
atcttac putative branch site (score: 3)
tttccgtttt putative PPT
attcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatcttattactctcttttttatcatgattcatatcaagattcaatcttacaattcatgtttccgttttgcagAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGTAGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG