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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttagatcactttcatgttttgtatcataccgttgattaaaaaaatctgagtattccatgggtttaatattatatgcagAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCATACTTCTTGTGCTAGGTGTCCTTAATTGGGACGATTGCCTAAGCGAAAAA

Basic information

species Arabidopsis thaliana
transcript AT5G64290.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124983396|gb|EL056130.1|EL056130
EST:     TTGCTGTCACTCTTTGGATCTGCGG                         AGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCAT
genomic: TTGCTGTCACTCTTTGGATCTGCGGgtaagtctta ... ttatatgcagAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataccgttgattaaaaaaatctgagtattccatgggtttaatattatatgcagAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCATACTTCTTGTGCTAGGTGTCCTTAATTGGGACGATTGCCTAAGCGAAAAA
                                     gtttaat  putative branch site (score: 4)
        ttgattaaaaaaatct  TA-rich tract