1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaactaattttgtatgtttaccaaaaggaaggaacttgtcttatatttattgcttagttaacttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCATTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATG
species | Arabidopsis thaliana |
transcript | AT5G64250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATGATGCTCACTTTGCCGGTGTCAAAGGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAEST: gi|116453508|gb|EG496100.1|EG496100
genomic: GGATGATGCTCACTTTGCCGGTGTCAAA-GTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAA
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453507|gb|EG496099.1|EG496099
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453498|gb|EG496090.1|EG496090
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453517|gb|EG496109.1|EG496109
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453516|gb|EG496108.1|EG496108
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|164137454|gb|EL968568.1|EL968568
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: GGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAEST: gi|86039417|gb|DR335172.1|DR335172
genomic: GGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAA
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|164206941|gb|EL967982.1|EL967982
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: GGATGATGCTCACTTTGCCGGTGTCAAAGGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAEST: gi|116453501|gb|EG496093.1|EG496093
genomic: GGATGATGCTCACTTTGCCGGTGTCAAA-GTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAA
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453499|gb|EG496091.1|EG496091
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039418|gb|DR335173.1|DR335173
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039416|gb|DR335171.1|DR335171
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039415|gb|DR335170.1|DR335170
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039419|gb|DR335174.1|DR335174
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAVTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTARMAAAGGCTGTTGCTGTAGGAGTAGACGCEST: gi|116453500|gb|EG496092.1|EG496092
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAG-AAAGGCTGTTGCTGTAGGAGTAGACGC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453502|gb|EG496094.1|EG496094
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGCCAAAGTTATTCCCCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039413|gb|DR335168.1|DR335168
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039414|gb|DR335169.1|DR335169
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453497|gb|EG496089.1|EG496089
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|116453503|gb|EG496095.1|EG496095
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGCCAAAGTTATTCCCCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCEST: gi|86039420|gb|DR335175.1|DR335175
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
EST: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAG GTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
genomic: AGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTATTCCTCAGgtaactaatt ... cttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCC
tttaccaaaaggaaggaacttgtcttatatttattgcttagttaacttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCATTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATG
agttaac putative branch site (score: 3)
ctttt CT-rich tract
ttatatttattgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaattttgtatgtttaccaaaaggaaggaacttgtcttatatttattgcttagttaacttttgaaagGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCATTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG