1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgaagtaactggtctaataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
species | Arabidopsis thaliana |
transcript | AT5G64130.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|124973294|gb|EL046936.1|EL046936
genomic: TCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTEST: gi|47828491|gb|CK118175.1|CK118175
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACT
EST: CACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGEST: gi|164004020|gb|ES013701.1|ES013701
genomic: CACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
EST: GGCTCATGCCAGAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAEST: gi|124977070|gb|EL050440.1|EL050440
genomic: GGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAA
EST: GAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAAG GATCATGAGCGAGCATACTTTEST: gi|164047227|gb|ES144642.1|ES144642
genomic: GAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAA-Ggtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTT
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGEST: gi|125297372|gb|EL311457.1|EL311457
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAGCGAGCATACTTTGACTCAGCTGEST: gi|163968699|gb|ES193949.1|ES193949
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTG
EST: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAG GATCATGAAGCGAGCATACTTTGACTCAGCTG
genomic: AGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGgtaagtgaag ... ttataatcagGATCATGA-GCGAGCATACTTTGACTCAGCTG
aataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
gtctaat putative branch site (score: 3)
tgtttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaagtaactggtctaataagagattttggggtttcattcttggtttttctgagatgtgtttataatcagGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT