1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtttgttatacctgtccctgattagaaaaagctcttctctttgaatgttactgagattgttaggaaatcacttaatttgatctgtcttgtgttgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAAGAG
species | Arabidopsis thaliana |
transcript | AT5G63980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATG GTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAACEST: gi|116482884|gb|EG525476.1|EG525476
genomic: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATGgttagtttgt ... tgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAAC
EST: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATG GTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAACEST: gi|125267000|gb|EL281085.1|EL281085
genomic: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATGgttagtttgt ... tgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAAC
EST: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATG GTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTT
genomic: AGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATGgttagtttgt ... tgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTT
ttactgagattgttaggaaatcacttaatttgatctgtcttgtgttgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAAGAG
aaatcacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttgttatacctgtccctgattagaaaaagctcttctctttgaatgttactgagattgttaggaaatcacttaatttgatctgtcttgtgttgaatttcagGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAAAAAGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA