1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatggacattactagaacctaatgagagaacggaaaagatttttttttcttttctgaactaatggtccatttctgatcatagGTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTTATGCTGGAAATCCGATGGGTGCGTA
species | Arabidopsis thaliana |
transcript | AT5G61510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAG GTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCNEST: gi|116455505|gb|EG498097.1|EG498097
genomic: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAGgtatggacat ... ctgatcatagGTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCA
EST: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAG GTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAEST: gi|116437739|gb|EG480331.1|EG480331
genomic: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAGgtatggacat ... ctgatcatagGTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCA
EST: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAG GTATGGAGGCT
genomic: TTACTTCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAGgtatggacat ... ctgatcatagGTATGGAGGCT
gaacggaaaagatttttttttcttttctgaactaatggtccatttctgatcatagGTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTTATGCTGGAAATCCGATGGGTGCGTA
tccatttct CT-rich tract
aaaagatttttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggacattactagaacctaatgagagaacggaaaagatttttttttcttttctgaactaatggtccatttctgatcatagGTATGGAGGCTGTTGGAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTTATGCTGGAAATCCGATGGGTGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA