1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttcatcacgtctcaaaactcctatttttttggtttcatagatatatatatatgatcatattacactgttttactaatattggtaatgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGCCGAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTC
species | Arabidopsis thaliana |
transcript | AT5G60660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG ATATGGAGGTGGAGCCEST: gi|19876401|gb|AU237232.1|AU237232
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCC
EST: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGEST: gi|301502396|gb|HO207936.1|HO207936
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
EST: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGEST: gi|116445951|gb|EG488543.1|EG488543
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
EST: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
atatatatatatgatcatattacactgttttactaatattggtaatgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGCCGAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTC
tactaat putative branch site (score: 1)
ttttactaatattggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcatcacgtctcaaaactcctatttttttggtttcatagatatatatatatgatcatattacactgttttactaatattggtaatgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGCCGAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA