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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttatattgaattgatcatccttgtttagcaatcacatttttgcttttgactaacagttgtaaatttggaaactttttgtcagTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAAAGTTGCATTGATCTTGTCTTAACAGAGGTTGACATGCCTGTGCATTC

Basic information

species Arabidopsis thaliana
transcript AT5G60100.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481392|gb|EG523984.1|EG523984
EST:     CTCAACACGCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAG                         TTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGA
genomic: CTCAACACGCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAGgttttcttat ... tttttgtcagTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatcacatttttgcttttgactaacagttgtaaatttggaaactttttgtcagTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAAAGTTGCATTGATCTTGTCTTAACAGAGGTTGACATGCCTGTGCATTC
                    gactaac  putative branch site (score: 1)
                                            ctttttgtc  putative PPT
                             ttgtaaattt  TA-rich tract