1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaagatgaaattacccttatctgcaatgctctttatatgatagttaccaaagattttgcttgttgtgcatatggtttaaaacttggtgtaaaaatgcagTGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACG
species | Arabidopsis thaliana |
transcript | AT5G59300.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTATC-GACCTCCTGATACTCTCTA TGAAGGA-GATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAAEST: gi|164179638|gb|ES205710.1|ES205710
genomic: CATTATCGGACCTCCTGATACTCTCTAgtaaacaact ... aaaaatgcagTGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAA
EST: TCGGACCTCCTGATACTCTCTA TGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATACCGA
genomic: TCGGACCTCCTGATACTCTCTAgtaaacaact ... aaaaatgcagTGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTAT-CCGA
taccaaagattttgcttgttgtgcatatggtttaaaacttggtgtaaaaatgcagTGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACG
tttaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagatgaaattacccttatctgcaatgctctttatatgatagttaccaaagattttgcttgttgtgcatatggtttaaaacttggtgtaaaaatgcagTGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACG
- - gatgaaa
- - - - - - -accctta
- - - - - - - - - - - - - atgctct
- - - - - - - - - - - - - - - - - - - - - - -taccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaact