1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtttgattctctctcgaagaagatcttttttttttttcttcgaaagggctaaactttatgtatcttttgttgaaattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTT
species | Arabidopsis thaliana |
transcript | AT5G58590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCA TTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTEST: gi|116477948|gb|EG520540.1|EG520540
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: TCTTGTTATGAGACAATCTAAAACCCTAAAGATTTGTGCCAATCACCTCA TTTCGTTTGGGATGGGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTEST: gi|164012838|gb|ES119939.1|ES119939
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: TGTTATGAGACAATCTAAAACCCTAAAGATCTGTGTCCAATCACCTCA TTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATAGAAAAGTCTTGTEST: gi|116472788|gb|EG515380.1|EG515380
genomic: TGTTATGAGACAATCTAAAACCCTAAAGATCTGTG-CCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAAT-GAAAAGTCTTGT
EST: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCA TTTCGTCTGGGATGGGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTEST: gi|125268423|gb|EL282508.1|EL282508
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: ATCTGTGCCAATCACCTCA TTTCGTCT-GGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
genomic: ATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
tttttttttcttcgaaagggctaaactttatgtatcttttgttgaaattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTT
ggctaaa putative branch site (score: 3)
ttttgttgaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgattctctctcgaagaagatcttttttttttttcttcgaaagggctaaactttatgtatcttttgttgaaattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT