Sequence
atgc intronic sequence ATGC exonic sequence...gatcttacttacatcttttttttttggacgacgatttgtgactaaaattttgaagaattgttttgtaaagaatcttacttacaccttttgaactaagcagATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACGGCGAGCTTCTCCACTGCTAACTCCGGCGTCCTGCCACCTCCAACCTCTA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G58400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878300|gb|AU239131.1|AU239131EST: TGTCATGCGCTGACATCCTGGCAATCACGGCTCGGGACTCGGTCCTTCTA ATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACG
genomic: TGTCATGCGCTGACATCCTGGCAATCACGGCTCGGGACTCGGTCCTTCTAgttagtacct ... aactaagcagATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttgaagaattgttttgtaaagaatcttacttacaccttttgaactaagcagATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACGGCGAGCTTCTCCACTGCTAACTCCGGCGTCCTGCCACCTCCAACCTCTA
tacttac putative branch site (score: 1)
aattgttttgtaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatcttacttacatcttttttttttggacgacgatttgtgactaaaattttgaagaattgttttgtaaagaatcttacttacaccttttgaactaagcagATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACGGCGAGCTTCTCCACTGCTAACTCCGGCGTCCTGCCACCTCCAACCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - acttaca
- - - - - - - - - - tttttgg
- - - - - - - - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - - - actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagaa