1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcaaacactctttgcctagtcccgtactctattatcaatattcaatagtgatacatcttggacctcattaagattataccactggctcattttgttgttgttgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAG
species | Arabidopsis thaliana |
transcript | AT5G58340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430318|gb|EG472910.1|EG472910
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGGGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430333|gb|EG472925.1|EG472925
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTTTGGAAGCCAGAAGAAGTGGAAGCTTTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430327|gb|EG472919.1|EG472919
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430324|gb|EG472916.1|EG472916
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430332|gb|EG472924.1|EG472924
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430336|gb|EG472928.1|EG472928
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430320|gb|EG472912.1|EG472912
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCEST: gi|116430321|gb|EG472913.1|EG472913
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
EST: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGA GTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
genomic: AAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAgtatgcaaac ... tgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGC
cttggacctcattaagattataccactggctcattttgttgttgttgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAG
tcattaagattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaacactctttgcctagtcccgtactctattatcaatattcaatagtgatacatcttggacctcattaagattataccactggctcattttgttgttgttgttgtgcagGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA