Sequence
atgc intronic sequence ATGC exonic sequencegttagttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G57410.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G57410.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
-----gttagttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT
|| | | || || |||||||| || | || || | | | ||| ||| | || | ||||| | | | || ||| ||| || ||||||||||||||| | ||||||||||| |||||| | || || || ||||| || |||||||||||||| ||
gtacgctttcctctgtttttgtggatgctagggttggct---ggtcttggaaactgtgtttctctaaggtttggttgtgtttttc----agGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86047425|gb|DR343180.1|DR343180EST: GTTTTATCTCAATCTGCGTCAGCAGG GGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTT
genomic: GTTTTATCTCAATCTGCGTCAGCAGGgttagttttc ... gattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT
tttttgtttttttg CT-rich tract
aatttttgtttttttg TA-rich tract