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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT

Basic information

species Arabidopsis thaliana
transcript AT5G57410.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57410.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
-----gttagttttcttcttaatccccctagggtttactttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT
      ||   | | || ||       ||||||||  ||        |  ||   ||  |  |   |  ||| ||| | ||  |     ||||| | | | || ||| ||| ||  ||||||||||||||| | ||||||||||| |||||| | || || || ||||| || |||||||||||||| || 
gtacgctttcctctgtttttgtggatgctagggttggct---ggtcttggaaactgtgtttctctaaggtttggttgtgtttttc----agGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047425|gb|DR343180.1|DR343180
EST:     GTTTTATCTCAATCTGCGTCAGCAGG                         GGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTT
genomic: GTTTTATCTCAATCTGCGTCAGCAGGgttagttttc ... gattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttaaaatctccaatgagtactgattggaatttttgtttttttgattgagaagGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAGACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTT
                                tttttgtttttttg  CT-rich tract
                              aatttttgtttttttg  TA-rich tract