Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86060084|gb|DR355841.1|DR355841EST: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAA GTTTTATGTAGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
genomic: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAgtaagaaact ... tgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
EST:
gi|86060083|gb|DR355840.1|DR355840EST: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAA GTTTTATGTAGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
genomic: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAgtaagaaact ... tgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
EST:
gi|86060082|gb|DR355839.1|DR355839EST: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAA GTTTTATGTAGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
genomic: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAgtaagaaact ... tgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGG
EST:
gi|125084928|gb|EL144963.1|EL144963EST: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAA GTTTTATGTCGCGGAAGTGCTT
genomic: ACACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAgtaagaaact ... tgttttgcagGTTTTATGTCGCGGAAGTGCTT
EST:
gi|125187642|gb|EL202596.1|EL202596EST: AAACGCTTCACCGAGCAAGCAGCTAA GTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACA
genomic: AAACGCTTCACCGAGCAAGCAGCTAAgtaagaaact ... tgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaagaatctagttttgtgcgtttatataaccttagtgacttgctgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGGGATCATTTACCGTGATCTGAAACCCGAGAACGTTCTTGTGAGAGATGAT
atataac putative branch site (score: 3)
ctgtttt putative PPT
tttatataacctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaactttttctaaactttctttatctaagaatctagttttgtgcgtttatataaccttagtgacttgctgttttgcagGTTTTATGTCGCGGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGGGATCATTTACCGTGATCTGAAACCCGAGAACGTTCTTGTGAGAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG