Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152038446|gb|AV823309.2|AV823309EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
EST:
gi|86076387|gb|DR372144.1|DR372144EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
EST:
gi|116456891|gb|EG499483.1|EG499483EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTG
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTG
EST:
gi|163966477|gb|ES185369.1|ES185369EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAAT
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAAT
EST:
gi|164126265|gb|ES092834.1|ES092834EST: ATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCA
genomic: ATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCA
EST:
gi|86082102|gb|DR377861.1|DR377861EST: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
genomic: CTTTCTTGTTTGATGGTCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGT
EST:
gi|163979819|gb|ES135192.1|ES135192EST: CGTCGTCTTCGTGCCGAGCAGACTCCAGATGAG CTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGG
genomic: CGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGgtaacatcac ... aattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttccgtttttcaaagttgtatgatttccttaaccgagaatcttcaattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGTGGTGGTGCTAAAAATGGCCTGAAGCTCTTCTGCTTTTAGTGGCGGTTAT
ccttaac putative branch site (score: 3)
aatcttcaatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatcactctctgtaccccattctcttttactgttttccgtttttcaaagttgtatgatttccttaaccgagaatcttcaattttacagCTTGAAATGGAAGATGGAGATGAGATCGATGCAATGCTTCATCAGACTGGTGGTGGTGCTAAAAATGGCCTGAAGCTCTTCTGCTTTTAGTGGCGGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC