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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttagttttcgttaaacgcattttgaaatttcgatttgacttcagatttttttagtagaaaccttatggatttgatcggttaggcttaaacggatcttcgctgaaattatttttttgtagCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCG

Basic information

species Arabidopsis thaliana
transcript AT5G54100.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125164062|gb|EL190759.1|EL190759
EST:     TTTTCGGCGCCCGTAGCTTCTCATCTCCCAGCAGTGATTTCAACAG                         CTACCACATTAATCCGCCGTCTAACTGGGGAAATCCGAATCGTGCCGGAGA
genomic: TTTTCGGCGCCCGTAGCTTCTCATCTCCCAGCAGTGATTTCAACAGgtattttagt ... ttttttgtagCTACCACATTAATCCGCCGTCTAACTGGGGAA-TCCGAATCGTGCCGGAGA
EST: gi|116425843|gb|EG468435.1|EG468435
EST:     CAACTTTTCGGCGCCCGTAGCTTCTCATCTCCCAGCAGTGATTTCAACAG                         CTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCGTGCCGGA
genomic: CAACTTTTCGGCGCCCGTAGCTTCTCATCTCCCAGCAGTGATTTCAACAGgtattttagt ... ttttttgtagCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCGTGCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatttgatcggttaggcttaaacggatcttcgctgaaattatttttttgtagCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCG
    atttgat  putative branch site (score: 5)
                                         ttattttttt  putative PPT
                                    tgaaattatttttttg  TA-rich tract