1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtttttgtttcctatttatctatttacttgagagtctctatgtccatgtatcgcctttgacgattagtttcattgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCTGGTCAAGAGTTTACCTTTACAATTGAGAGAGGAGTCAGCACACCAAGTT
species | Arabidopsis thaliana |
transcript | AT5G52920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAG GGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCTEST: gi|86057237|gb|DR352994.1|DR352994
genomic: ACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgttttt ... ttgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCT
EST: ACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAGG GGTCCGGAAGTTAGGAGTGGAGATTTACCEST: gi|86057128|gb|DR352885.1|DR352885
genomic: ACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgttttt ... ttgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACC
EST: AATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAG GGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCTEST: gi|86057145|gb|DR352902.1|DR352902
genomic: AATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgttttt ... ttgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCT
EST: AATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAG GGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCT
genomic: AATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgttttt ... ttgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCT
ttgagagtctctatgtccatgtatcgcctttgacgattagtttcattgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCTGGTCAAGAGTTTACCTTTACAATTGAGAGAGGAGTCAGCACACCAAGTT
ctttgac putative branch site (score: 4)
tttcatt putative PPT
attagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttttgtttcctatttatctatttacttgagagtctctatgtccatgtatcgcctttgacgattagtttcattgttcatagGGTCCGGAAGTTAGGAGTGGAGATTTACCTCAGCCAATTATGTTAGATCCTGGTCAAGAGTTTACCTTTACAATTGAGAGAGGAGTCAGCACACCAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG