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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgaaactcattgttgtgttaagtaatgcaaaacgattttttctttcttactgatattatttatgctttacagAGATGTATTCAATGAGGAAGATTGGAAATTGGTTCAGCTTGTGCTTACTTTATTCAGGAATTTACTTGCTATTCATGATGTATCTCCGATTCAGAAAGCT

Basic information

species Arabidopsis thaliana
transcript AT5G52910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52910.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G30420.1 (Glycine max), 3'ss of exon 3
----------------------gtaagttcgaaactcattgttgtgt----taagtaatgcaaaacgattttttctttcttac-tgatattatttatgc-tttacagAGATGTATTCAATGAGGAAGATTGGAAATTGGTTCAGCTTGTGCTTACTTTATTCAGGAATTTACTTGCTATTCATGATGTATCTCCGATTCAGAAAGCT
                      ||   || |  | |  |   ||||      ||| || | |     |   || |||  ||   || | ||| || |   ||||||| |     || | |||||| |||||||||||||| ||||| |||||||| ||||| || ||| | || ||| |||| ||  |  |  |    |||||  | 
gtgagaggctgcaaactgctgtgtgtttttggtattgttgagtgtggatggaaagaaaagaattggaagacttacttatttgtgtgtttttaattgtttgtttacagTGGCACGTTTAGTGAGGATGATTGGAAATTGGTACAGCTAGTGCTTACGTTATTTAGAAATATCCTAGCTGTTCAAGAGATTCCGACTCACCAGAAGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagtaatgcaaaacgattttttctttcttactgatattatttatgctttacagAGATGTATTCAATGAGGAAGATTGGAAATTGGTTCAGCTTGTGCTTACTTTATTCAGGAATTTACTTGCTATTCATGATGTATCTCCGATTCAGAAAGCT
                              tactgat  putative branch site (score: 2)
                 attttttctttcttac  TA-rich tract