1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatttggcattgaaaaaggatacagctttgtagattacttccaaaattttgtgtcacgatgggaagatgtatatgatactttgttaatatcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGATGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGG
species | Arabidopsis thaliana |
transcript | AT5G51880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTEST: gi|19875032|gb|AU235863.1|AU235863
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTEST: gi|116468987|gb|EG511579.1|EG511579
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
aattttgtgtcacgatgggaagatgtatatgatactttgttaatatcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGATGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGG
tgttaat putative branch site (score: 3)
tatatgatactttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttggcattgaaaaaggatacagctttgtagattacttccaaaattttgtgtcacgatgggaagatgtatatgatactttgttaatatcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTTGAAGATGGAAACCGGACCTATTACACATTGTTGATATATCTAAGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - gaaaaag
- - - - - - - - - - - - - - - - - - - - -ccaaaat