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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctgttttaagaaaagttagttagtttcttgaatccaatagaccgttccttgttgatgaagaagcattgttttatgttttcagGTAGCAAATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGAGCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGC

Basic information

species Arabidopsis thaliana
transcript AT5G50570.2
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatccaatagaccgttccttgttgatgaagaagcattgttttatgttttcagGTAGCAAATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGAGCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGC
                      tgttgat  putative branch site (score: 4)
                                              tgttttc  putative PPT
                                     attgttttatgtttt  TA-rich tract