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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctctatgctagttttcatggtttttggtctaggataagtttttttcttatgaatgttactttggaagtatctttgacatgttctgttctggattgctagGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGC

Basic information

species Arabidopsis thaliana
transcript AT5G50430.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50430.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 2
--gctctatgctagttttcatggtttttggtctaggataagtttttttcttatgaatgttactttggaagtatctttgacatgttctgttctggattgctagGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGC
  |    ||  |  |||| ||   |       ||  | || |  |  | || |  |   ||  |     |  |  ||   |  ||    | || |||   |||| ||||| || |||||||| ||||||||||| |||| ||| |||||||| ||||
acgtggcat-ttccttttaataaataaaaagataaaaaaaatgatgatatt-tatagaatatgtcaactgggtaattcttaattttaaatttgtatttgcagGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGC

upper sequence: AT5G50430.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------------------gctctatgc-tagttttcatggtttttggtctaggataagtttttttcttatgaatgttactttgg--aagtatctttgacatgttctgttctggattgctagGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGC
                                           ||   |   ||||| |      | |   |   ||| | |   ||||  | ||  | |   || ||  || | | ||   |||| | |  | || | |   |||||||||| || ||||| ||||| || |||||||||||||| |||||||| ||||
gtatgccttcttaatatgcccttttaaattgtataaataactactaattatatagttatagcacatatgcattctggaaatgaacttttgatttgtttttcttttgggttaaatttgttaatcatgcttt-ctatgaacttgcagGAACCAGTTTCCCATGTGGTTGCCCGCCCTTCCCCAAATGATATTCTTGAGTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatgaatgttactttggaagtatctttgacatgttctgttctggattgctagGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGC
                          ctttgac  putative branch site (score: 4)
       aatgtta  TA-rich tract