1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagcaatcattttcttgtttctcaatcttctgggtcatttggatagtgattatagatgttgaagttgattggtatacaactgtagGAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATG
species | Arabidopsis thaliana |
transcript | AT5G50250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTTCAATAGTTTT GAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCAEST: gi|124967046|gb|EL041108.1|EL041108
genomic: AGAAGTTCAATAGTTTTgtaagcaatc ... acaactgtagGAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCA
EST: TGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGAAGTTCAATAGTTTT GAAGTGAATGGGAGG
genomic: TGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGAAGTTCAATAGTTTTgtaagcaatc ... acaactgtagGAAGTGAATGGGAGG
tgggtcatttggatagtgattatagatgttgaagttgattggtatacaactgtagGAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATG
agttgat putative branch site (score: 5)
attatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaatcattttcttgtttctcaatcttctgggtcatttggatagtgattatagatgttgaagttgattggtatacaactgtagGAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC