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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatctactctttaactttacttcttttgtaagttttaggtataaaaaagaagtaattctattaatataaacatgcagGACTCACCTTACAGGCCAAGTAAAGGAAATGAAACAACATATGAGGAAAGTTTTAATCAGTTATGGAGTATGTCCGGTGAAAGTTGTCCAATTGGGTCAA

Basic information

species Arabidopsis thaliana
transcript AT5G50150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164235866|gb|ES129225.1|ES129225
EST:     GCCAGAAACCACTT                         GACTCACCTTACAGGCCAAGTAAAGGAAATGAAACAACATATGAGGAAAGT
genomic: GCCAGAAACCACTTgtaatgaatc ... aaacatgcagGACTCACCTTACAGGCCAAGTAAAGGAAATGAAACAACATATGAGGAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgtaagttttaggtataaaaaagaagtaattctattaatataaacatgcagGACTCACCTTACAGGCCAAGTAAAGGAAATGAAACAACATATGAGGAAAGTTTTAATCAGTTATGGAGTATGTCCGGTGAAAGTTGTCCAATTGGGTCAA
                                    tattaat  putative branch site (score: 2)
          ttttaggtataaaaaa  TA-rich tract