1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgttccttttaccatttttgttcttctcttttggatccgtaactgttctacttcgggcattgatgattatcattgtggctcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCAAG
species | Arabidopsis thaliana |
transcript | AT5G48760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTGTTGGGCCGTCTTTCEST: gi|164237574|gb|ES093914.1|ES093914
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCEST: gi|125039186|gb|EL111455.1|EL111455
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTEST: gi|86017891|gb|DR313637.1|DR313637
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTT
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTGTTGGGCCGTCTTTCEST: gi|86017890|gb|DR313636.1|DR313636
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTEST: gi|86023702|gb|DR319455.1|DR319455
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGT
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTEST: gi|86017895|gb|DR313641.1|DR313641
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCT
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTGTTGGGCCGTCTTTCEST: gi|47831264|gb|CK120948.1|CK120948
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCEST: gi|86023706|gb|DR319459.1|DR319459
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCEST: gi|125264433|gb|EL278518.1|EL278518
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAAEST: gi|47827976|gb|CK117660.1|CK117660
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAA
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCEST: gi|86023705|gb|DR319458.1|DR319458
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGC-GTCTEST: gi|86017892|gb|DR313638.1|DR313638
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCT
EST: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTGTTGGGCCGTCTTTCEST: gi|164220530|gb|ES042158.1|ES042158
genomic: CCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
EST: CCCTGATGCTCTCAA GGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
genomic: CCCTGATGCTCTCAAgtttgttcct ... tcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTC
atccgtaactgttctacttcgggcattgatgattatcattgtggctcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCAAG
ctcttcttc CT-rich tract
attatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttccttttaccatttttgttcttctcttttggatccgtaactgttctacttcgggcattgatgattatcattgtggctcttcttcagGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA