1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttctccattcatctttctttctcattattgaatgtgctaaaatcatgatctctttgtttccaatctaattccttgtaattggatctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
species | Arabidopsis thaliana |
transcript | AT5G48580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAG GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGEST: gi|116469680|gb|EG512272.1|EG512272
genomic: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
EST: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAG GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGEST: gi|86084981|gb|DR380740.1|DR380740
genomic: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
EST: TCTCTCTCATTTCACTCCAAG GTTTTGCCAAGAAGMCCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
genomic: TCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
aaatcatgatctctttgtttccaatctaattccttgtaattggatctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
tctgttt CT-rich tract
aatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctccattcatctttctttctcattattgaatgtgctaaaatcatgatctctttgtttccaatctaattccttgtaattggatctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT